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Changelog

Source: NEWS.md

vcfppR 0.7.2

  • make htslib available for including and linking by other packages

vcfppR 0.7.0

CRAN release: 2024-12-21

  • fix parsing BCF when subsetting sample ids and the genomic region at the same time
  • fix vcfcomp with stats="nrc" when the input vectors have different length
  • use the latest version of htslib v1.21
  • reduce the size of installation

vcfppR 0.6.0

CRAN release: 2024-09-29

  • upgrade vcfpp.h to v0.6.0
  • new API vcfreader$setRegion
  • new API vcfreader$getStatus

vcfppR 0.5.0

CRAN release: 2024-09-22

  • upgrade vcfpp.h to v0.5.1
  • add bcfreader$updateSamples() function
  • vcfcomp: can take vcftable object as input
  • vcfcomp: defaults changed setid=FALSE
  • bug fix

vcfppR 0.4.6

CRAN release: 2024-05-24

  • add vcfplot function
  • fix bug in vcftable when FORMAT has unaligned list
  • add vignette on vcfcomp

vcfppR 0.4.5

CRAN release: 2024-04-08

  • add vcfcomp function
  • fix memory leaks and pass ASAN check

vcfppR 0.4.0

CRAN release: 2024-02-26

  • add setid option for vcftable
  • patches for upcoming Rtools on windows

vcfppR 0.3.8

CRAN release: 2024-01-14

  • fix issues on M1 Mac

vcfppR 0.3.7

  • add vcfreader@rmFormatTag()
  • add vcfreader@samples()
  • vcftable supports vartype = ‘sv’

vcfppR 0.3.6

  • add vcfreader::line
  • remove vcfreader::setVariant
  • bug fix setFormatStr
  • more units tests

vcfppR 0.3.5

CRAN release: 2023-12-14

  • add vcfreader and vcfwriter

vcfppR 0.3.4

  • support filters by variant ID

vcfppR 0.3.3

  • use API of vcfpp.h v0.3.1
  • set missing vaules in FORMAT to NA
  • support filters by QUAL, FILTER and INFO

vcfppR 0.3.0

  • First release using vcfpp.h v0.3.0
  • add vcftable function
  • add vcfsummary function
  • add vcfpopgen function