Changelog

Source: NEWS.md

vcfppR 0.8.0

• copy static libs into libs folder

vcfppR 0.7.6

CRAN release: 2025-03-31

• fix CRAN notes

vcfppR 0.7.5

• fix issue #14 to handle libdeflate dependency on linux

vcfppR 0.7.4

• fix issue #13 to speedup setRegion

vcfppR 0.7.3

• enable libdeflate on linux

vcfppR 0.7.2

• make htslib available for including and linking by other packages

vcfppR 0.7.0

CRAN release: 2024-12-21

• fix parsing BCF when subsetting sample ids and the genomic region at the same time
• fix vcfcomp with stats="nrc" when the input vectors have different length
• use the latest version of htslib v1.21
• reduce the size of installation

vcfppR 0.6.0

CRAN release: 2024-09-29

• upgrade vcfpp.h to v0.6.0
• new API vcfreader$setRegion
• new API vcfreader$getStatus

vcfppR 0.5.0

CRAN release: 2024-09-22

• upgrade vcfpp.h to v0.5.1
• add bcfreader$updateSamples() function
• vcfcomp: can take vcftable object as input
• vcfcomp: defaults changed setid=FALSE
• bug fix

vcfppR 0.4.6

CRAN release: 2024-05-24

• add vcfplot function
• fix bug in vcftable when FORMAT has unaligned list
• add vignette on vcfcomp

vcfppR 0.4.5

CRAN release: 2024-04-08

• add vcfcomp function
• fix memory leaks and pass ASAN check

vcfppR 0.4.0

CRAN release: 2024-02-26

• add setid option for vcftable
• patches for upcoming Rtools on windows

vcfppR 0.3.8

CRAN release: 2024-01-14

• fix issues on M1 Mac

vcfppR 0.3.7

• add vcfreader@rmFormatTag()
• add vcfreader@samples()
• vcftable supports vartype = ‘sv’

vcfppR 0.3.6

• add vcfreader::line
• remove vcfreader::setVariant
• bug fix setFormatStr
• more units tests

vcfppR 0.3.5

CRAN release: 2023-12-14

• add vcfreader and vcfwriter

vcfppR 0.3.4

• support filters by variant ID

vcfppR 0.3.3

• use API of vcfpp.h v0.3.1
• set missing vaules in FORMAT to NA
• support filters by QUAL, FILTER and INFO

vcfppR 0.3.0

• First release using vcfpp.h v0.3.0
• add vcftable function
• add vcfsummary function
• add vcfpopgen function