Skip to contents

Make sensible and beautiful plots based on various objects in vcfppR

Source: R/vcf-plot.R
vcfplot.Rd

Make sensible and beautiful plots based on various objects in vcfppR

Usage

vcfplot(
  obj,
  which.sample = NULL,
  which.format = 10,
  variant = c("SNP", "INDEL"),
  pop = NULL,
  ...
)

Arguments

obj

object returned by vcftable, vcfcomp, vcfsummary

which.sample

which sample to be plotted. NULL will aggregate all samples.

which.format

which FORMAT field to be plotted. Defaults will use the 10-th names.

variant

which types of variant are desired

pop

file contains population information

...

parameters passed to graphics